Table 5 Pairwise comparisons between the Pfam ^S matrix and other matrices estimated by the FastMG procedure

Pfam^S

${\mathrm{Pfam}}_8^{\mathrm{R}}$

0.01

299 (67)

181 (41)

119 (8)

55 (8)

Pfam^S

${\mathrm{Pfam}}_{16}^{\mathrm{R}}$

0.01

294 (54)

186 (35)

132 (6)

55 (3)

Pfam^S

${\mathrm{Pfam}}_{24}^{\mathrm{R}}$

0.01

309 (57)

171 (38)

142 (10)

51 (3)

Pfam^S

${\mathrm{Pfam}}_{32}^{\mathrm{R}}$

0.00

275 (40)

205 (35)

116 (6)

65 (2)

Pfam^S

${\mathrm{Pfam}}_{64}^{\mathrm{R}}$

0.00

279 (38)

201 (28)

117 (4)

64 (3)

Pfam^S

${\mathrm{Pfam}}_8^{\mathrm{T}}$

0.00

218 (54)

262 (64)

51 (3)

80 (8)

Pfam^S

${\mathrm{Pfam}}_{16}^{\mathrm{T}}$

0.00

190 (33)

290 (51)

41 (2)

104 (6)

Pfam^S

${\mathrm{Pfam}}_{24}^{\mathrm{T}}$

0.00

212 (33)

268 (39)

50 (2)

82 (1)

Pfam^S

${\mathrm{Pfam}}_{32}^{\mathrm{T}}$

0.00

233 (36)

247 (36)

58 (1)

72 (0)

Pfam^S

${\mathrm{Pfam}}_{64}^{\mathrm{T}}$

0.00

166 (21)

314 (31)

27 (0)

91 (2)