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Table 7 The log likelihood per site comparisons between the Mam S matrix and matrices estimated by the FastMG procedure

From: FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets

 

Ma m 8 R /Ma m 8 T

Ma m 16 R /Ma m 16 T

Ma m 24 R /Ma m 24 T

Ma m 32 R /Ma m 32 T

Ma m 64 R /Ma m 64 T

LogLK per site

0.72/-0.04

0.58/-0.06

0.49/-0.05

0.42/-0.05

0.26/-0.02

# Significantly better

10/0

10/0

10/0

10/0

10/0

# Significantly worse

0/1

0/4

0/4

0/5

0/3

  1. LogLK per site: average log-likelihood per site difference between MamS and the other matrices, positive/negative values indicate that the MamS matrix was better/worse than the other matrices. #Significantly better: number of tests where MamS is significantly better than the MamR/MamT matrix (based on Kishino-Hasegawa test). #Significantly worse: number of tests where MamS is significantly worse than the MamR/MamT matrix (based on Kishino-Hasegawa test).