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Table 8 The log likelihood per site comparisons between the original MtMam matrix and matrices estimated by the FastMG procedure

From: FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets

 

Ma m 8 R /Ma m 8 T

Ma m 16 R /Ma m 16 T

Ma m 24 R /Ma m 24 T

Ma m 32 R /Ma m 32 T

Ma m 64 R /Ma m 64 T

LogLK per site

0.37/-0.39

0.23/-0.40

0.14/-0.40

0.07/-0.40

-0.09/-0.37

# Significantly better

0/0

0/0

0/0

0/0

0/0

# Significantly worse

0/10

0/10

1/10

4/10

7/10

  1. LogLK per site: average log-likelihood per site difference between the original MtMam and the other matrix, positive/negative values indicate that the original MtMam matrix was better/worse than the other matrix. #Significantly better: number of tests where the original MtMam is significantly better than the MamR/MamT matrix (based on Kishino-Hasegawa test). #Significantly worse: number of tests where the original MtMam is significantly worse than the MamR/MamT matrix (based on Kishino-Hasegawa test).