PSEUDOMARKER 2.0: efficient computation of likelihoods using NOMAD

BMC Bioinformatics

Table 1 Summary of all data sets

Test set	Description	Reference
fin1	Familial combined hyperlipidemia pedigrees from Finland	Pajukanta et al.[23]
fin2	Migraine pedigrees from Finland	Wessman et al.[24], Kaunisto et al.[25], Hiekkalinna et al.[4]
fin3	A sub set of the Migraine families (different phenotype and genotyped individuals than on data set fin2)	Tikka-Kleemola et al.[26]
fin4	Schizophrenia families from Finland	Ekelund et al.[27], Hiekkalinna et al.[4]
fin5	Same as fin1, but with multiallelic markers
fin6	Same as fin1, but with highly polymorphic marker
x.linked	Extended pedigrees and triads from northern Finland with real X-chromosomal marker data	Karjalainen et al.[28]
100sibs	Artificial sib-pair pedigrees	Hiekkalinna [29]
100sibs.c	Artificial sib-pair pedigrees with additional cases	Hiekkalinna [29]
100sibs.cc	Artificial sib-pair pedigrees with additional cases and controls	Hiekkalinna [29]
mixed	Various size artificial pedigrees (triads, sib-pairs, and extended pedigrees)	Hiekkalinna [29]
noparents	Artificial affected sib-pairs with no parental genotypes	Hiekkalinna [29]
FHS	Framingham Heart-Study marker data and phenotypes	Larson et al.[30]
FinnTwin12	Finnish twins and twin families	Kaprio et al.[31, 32], Törnwall et al.[33]

ISSN: 1471-2105