Figure 3
From: Comparison of genotype clustering tools with rare variants
Locus and sample missing rate. Boxplots showing the distribution of (A) locus and (B) sample missing rates. Values closer to 0 (100% completeness) are preferable. Rates are shown for each of the six tools: GenCall (original and optimized cluster files), GenoSNP (original and optimized), optiCall (without excluding markers failing Hardy-Weinberg) and zCall. The median is shown with a red line and the mean is indicated above each plot. The red dots represent outliers according to the interquartile range. The rates are shown for 10,856 samples and 247,590 markers (markers located on chromosome Y were excluded).