Figure 4
From: Comparison of genotype clustering tools with rare variants
Duplicated sample concordance. Boxplots showing the distribution of pairwise concordance of duplicated samples. Red lines are the median and the numbers at the bottom of the plot represent the concordance means. The red dots represent the outliers according to the interquartile range. The six tools are shown (from left to right): GenCall (original and optimized cluster files), GenoSNP (original and optimized), optiCall (without excluding markers failing Hardy-Weinberg) and zCall. A total of 4,892 sample pairs is shown.