From: Comparison of genotype clustering tools with rare variants
Tool | NA12763 _R | NA12763 _R1 | NA12763 _R2 | |||
---|---|---|---|---|---|---|
Rate | Number | Rate | Number | Rate | Number | |
GenCall (original) | 0.998591 | 127,062 | 0.998623 | 127,093 | 0.998425 | 126,980 |
GenCall (optimized) | 0.998963 | 127,323 | 0.998963 | 127,323 | 0.998979 | 127,312 |
GenoSNP (original) | 0.966771 | 113,365 | 0.907042 | 97,345 | 0.762193 | 93,555 |
GenoSNP (optimized) | 0.996161 | 126,848 | 0.996446 | 126,893 | 0.995795 | 126,748 |
optiCall | 0.995421 | 127,334 | 0.995413 | 127,323 | 0.994995 | 127,277 |
zCall | 0.998785 | 127,545 | 0.998793 | 127,544 | 0.998785 | 127,545 |