From: Comparison of genotype clustering tools with rare variants
Tool | NA12763 _R | NA12763 _R1 | NA12763 _R2 | |||
---|---|---|---|---|---|---|
Rate | Number | Rate | Number | Rate | Number | |
GenCall (original) | 0.999478 | 114,975 | 0.999461 | 115,008 | 0.999486 | 114,876 |
GenCall (optimized) | 0.999393 | 115,288 | 0.999384 | 115,288 | 0.999393 | 115,279 |
GenoSNP (original) | 0.999630 | 97,236 | 0.998973 | 78,868 | 0.925482 | 74,210 |
GenoSNP (optimized) | 0.999190 | 114,814 | 0.999138 | 114,910 | 0.999207 | 114,687 |
optiCall | 0.998990 | 114,815 | 0.998972 | 114,805 | 0.999006 | 114,701 |
zCall | 0.999281 | 115,438 | 0.999281 | 115,437 | 0.999290 | 115,438 |