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Table 3 Co-localized pairs of aminoacids

From: FISH Amyloid – a new method for finding amyloidogenic segments in proteins based on site specific co-occurence of aminoacids

  

2

3

4

5

All + sup35

1

S-F, G-V

S-V, Y-N

S-I, Y-Y, L-Y, I-I

S-I, Y-Q

2

 

F-L, T-V

V-I, T-I, V-Y, F-I

R-R, T-I, V-I

3

  

V-I, L-I, N-Y

V-I, L-V

 

4

   

I-I, I-F, Y-R, Y-I

  1. The co-occurrence pattern obtained with the sliding window of length 5 after training on extended experimental dataset. The first letter of each pair corresponds to the window location indicated by vertical numbers, the second letter to a number indicated horizontally. The table was obtained from data presented in Figure 5 after executing the cut off for the threshold of 0.4.
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BMC Bioinformatics

ISSN: 1471-2105

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