Sequence Ontology (SO) | |||||
---|---|---|---|---|---|
NCBO Annotator | MetaMap | ConceptMapper | |||
Parameter | Value | Parameter | Value | Parameter | Value |
wholeWordOnly | YES | model | STRICT | searchStrategy | CONTIGUOUS |
filterNumber | ANY | gaps | NONE | caseMatch | INSENSITIVE |
stopWords | ANY | wordOrder | ANY | stemmer | Porter/BioLemmatizer |
SWCaseSensitive | ANY | acronymAbb | DEFAULT/UNIQUE | stopWords | NONE |
minTermSize | THREE | derivationalVariants | NONE | orderIndLookup | OFF |
withSynonyms | YES | scoreFilter | 600 | findAllMatches | NO |
minTermSize | 3 | synonyms | EXACT ONLY | ||
Protein Ontology (PRO) | |||||
NCBO Annotator | MetaMap | ConceptMapper | |||
Parameter | Value | Parameter | Value | Parameter | Value |
wholeWordOnly | YES | model | ANY | searchStrategy | ANY |
filterNumber | ANY | gaps | NONE | caseMatch | CASE FOLD DIGITS |
stopWords | PubMed | wordOrder | ANY | stemmer | NONE |
SWCaseSensitive | ANY | acronymAbb | DEFAULT/UNIQUE | stopWords | NONE |
minTermSize | ONE/THREE | derivationalVariants | NONE | orderIndLookup | OFF |
withSynonyms | YES | scoreFilter | 600 | findAllMatches | NO |
minTermSize | 3/5 | synonyms | ALL | ||
NCBI Taxonomy | |||||
NCBO Annotator | MetaMap | ConceptMapper | |||
Parameter | Value | Parameter | Value | Parameter | Value |
wholeWordOnly | YES | model | ANY | searchStrategy | SKIP ANY/ALLOW |
filterNumber | ANY | gaps | NONE | caseMatch | ANY |
stopWords | ANY | wordOrder | ORDER MATTERS | stemmer | BioLemmatizer |
SWCaseSensitive | ANY | acronymAbb | DEFAULT/UNIQUE | stopWords | PubMed |
minTermSize | FIVE | derivationalVariants | NONE | orderIndLookup | OFF |
withSynonyms | ANY | scoreFilter | 0/600 | findAllMatches | NO |
minTermSize | 3 | synonyms | EXACT ONLY | ||
ChEBI | |||||
NCBO Annotator | MetaMap | ConceptMapper | |||
Parameter | Value | Parameter | Value | Parameter | Value |
wholeWordOnly | YES | model | STRICT | searchStrategy | CONTIGUOUS |
filterNumber | ANY | gaps | NONE | caseMatch | ANY |
stopWords | ANY | wordOrder | ORDER MATTERS | stemmer | BioLemmatizer |
SWCaseSensitive | ANY | acronymAbb | DEFAULT/UNIQUE | stopWords | NONE |
minTermSize | ONE/THREE | derivationalVariants | NONE | orderIndLookup | OFF |
withSynonyms | YES | scoreFilter | 0/600 | findAllMatches | YES |
minTermSize | 5 | synonyms | EXACT ONLY |