Stability SCAD: a powerful approach to detect interactions in large-scale genomic study

BMC Bioinformatics

Table 6 Empirical selection probability of significant SNP pairs in Nanjing study by the _S LASSO

SNP1(rs)	Gene1	SNP2(rs)	Gene2	^a Π
SNP1(rs)	Gene1	SNP2(rs)	Gene2	Nanjing study _SLASSO
rs929087	FASLG	rs12544802	PTK2	0.964
rs4946933	FOXO3	rs11231740	BAD	0.890
rs2853462	CHRNG	rs7856889	MUSK	0.880
rs7445640	TERT	rs10733579	MUSK	0.824
rs411751	PIK3R1	rs939269	PTK2B	0.794
rs7839119	PTK2	rs4524871	MUSK	0.746
rs3781626	RAPSN	rs6018348	SRC	0.734
rs7839119	PTK2	rs12544802	PTK2	0.724
rs725787	PTK2B	rs5998196	YWHAH	0.688
rs6578141	PTK2	rs1940245	MUSK	0.636

^aΠ represents a predictor’s empirical probability of model inclusion under 500 times subsampling.

ISSN: 1471-2105