Table 4 Qualitative comparison of different tools
From: eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains
CAMBer | eCAMBer | Mugsy-Annotator | GMV | |
|---|---|---|---|---|
Input data | GS, GA | GS, optional GA | GS, GA | GS |
Mapping of similar sequences | BLAST | BLAST | Multiple WGA | BLAST |
Detection of gene presence inconsistencies | Yes | Yes | Yes | No |
Detection of gene start inconsistencies | Yes | Yes | Yes | Yes |
Correction of gene presence annotations | No | Yes (add. and rem.) | Yes (only add.) | No |
Correction of gene start annotations | No | Yes | Yes | Yes |
Multithreading | Partial | Yes | No | Partial |