From: eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains
PATRIC | Prodigal | ||||||
---|---|---|---|---|---|---|---|
Statistic | Input | MA | eCAMBer | Input | GMV | MA | eCAMBer |
# of incorrectly removed genes | NA | 0 | 1224 | NA | 0 | 0 | 388 |
# of incorrectly added genes | NA | 1177 | 792 | NA | 0 | 344 | 331 |
# of correctly removed genes | NA | 0 | 3993 | NA | 0 | 0 | 1185 |
# of correctly added genes | NA | 410 | 701 | NA | 0 | 210 | 1447 |
# of incorrect →correct TIS changes | NA | 4812 | 1591 | NA | 149 | 1015 | 290 |
# of incorrect →incorrect TIS changes | NA | 2223 | 747 | NA | 28 | 1018 | 113 |
# of correct →incorrect TIS changes | NA | 4279 | 669 | NA | 78 | 3618 | 170 |
Precision for gene starts | 0.665 | 0.663 | 0.699 | 0.764 | 0.764 | 0.734 | 0.775 |
Recall for gene starts | 0.695 | 0.702 | 0.703 | 0.752 | 0.753 | 0.727 | 0.765 |
f1 for gene starts | 0.680 | 0.682 | 0.701 | 0.758 | 0.759 | 0.731 | 0.770 |
Precision for gene ends | 0.892 | 0.882 | 0.920 | 0.931 | 0.931 | 0.928 | 0.940 |
Recall for gene ends | 0.931 | 0.935 | 0.926 | 0.917 | 0.917 | 0.919 | 0.927 |
f1 for gene ends | 0.911 | 0.908 | 0.923 | 0.924 | 0.924 | 0.923 | 0.934 |