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Table 2 Compression efficiency identifies bovine signatures of selection 1

From: Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest

Chr Mbp Angus Brahman Genes (300 Kb up and down) Cross ref
Het (%) CE Z-score Het (%) CE Z-score
2 62.1 8.596 0.976 2.886 22.053 0.962 0.622 DARS, LCT, MCM6, R3HDM1, UBXN4, ZRANB3 [22, 34, 35]
3 28.5 1.499 0.985 57.316 33.883 0.949 -0.798 AMPD1, CSDE1, NGF, NRAS, SIKE1, TSPAN2 -
5 47.9 30.669 0.961 -0.014 5.737 0.977 13.380 GRIP1, HELB, IRAK3, LLPH, TMBIM4 [22, 23, 34, 36, 37]
5 121.1 31.960 0.936 -0.023 9.453 0.956 6.100 ALG12, CRELD2, MLC1, PANX2, TRABD *
6 77.6 9.009 0.976 0.259 13.584 0.963 4.293 LPHN3 -
12 24.7 26.202 0.953 -0.004 12.780 0.958 4.202 ALG5, EXOSC8, FAM48A, POSTN, RFXAP, SMAD9 [34]
19 63.9 27.905 0.945 -0.013 8.545 0.965 7.798 CACNG1, CACNG4, CACNG5, HELZ [34]
22 51.3 33.490 0.936 -0.026 9.342 0.963 6.091 AMT, APEH, ARIH2, CCDC36, CCDC71, DAG1, IMPDH2, IP6K1, KLHDC8B, LAMB2, MST1, NICN1, P4HTM, QARS, QRICH1, RHOA, RNF123, TCTA, USP19, USP4, WDR6 [24, 34]
X 39.1 0.644 0.982 1.185 3.639 0.964 1.536 DKC1, F8, FUNDC2, GAB3, KIR3DL2, MPP1, MTCP1 *
X 86.9 0.081 0.986 3.149 5.991 0.951 -0.111 EFNB1, PJA1, STARD8, YIPF6 [24]
  1. 1Heterozygosis, Compression Efficiency and Z-scores values are averages of a window (+/- 300 Kb) from the reference position.*The SNPs giving the signal in these regions were unassigned on the bovine assembly Btau4.2.
  2. Enomic regions with noteworthy (Top 1%) Z-score normalized heterozygosity corrected compression efficiency across bovine Brahman and Angus populations.