Skip to main content

Table 2 Sensitivity and specificity of TIF

From: Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements

  

ttm2

ttm5

  

aFASTA

bLoci

FASTA

Loci

Head and tail (bp)

TSD (bp)

c2.2.26

d2.2.29+

2.2.26

2.2.29+

21

5

28

4

3

52

11

10

20

5

28

4

3

56

12

11

19

5

29

4

3

56

12

11

18

5

29

4

3

57

12

11

17

5

34

4

3

63

12

11

16

5

43

4

3

74

12

11

15

5

93

3

2

122

12

11

14

5

167

3

2

190

12

11

13

5

424

3

2

433

12

11

12

5

1616

3

2

1677

12

11

11

5

4038

3

2

4142

12

11

  1. aNumbers of flanking sequences detected with head or tail sequences. bNumbers of detected loci on the reference genome by cBLAST 2.2.26 and dBLAST 2.2.29 + .