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Table 2 SNP-miRNA pairs reported to disturb miRNA bindings by mrSNP for SNPs - miRNA couples obtained from miRdSNPs

From: mrSNP: Software to detect SNP effects on microRNA binding

(a) Pairs captured with the minimum matching criteria
SNP miRNA Chr Position Alleles Success Explanation
rs8829 hsa-miR-101 7 148504618 C A Binds one of the sequences with 8 consecutive matches. SNP breaks the match on 2nd position, min. match critera is not satisfied.
rs28635788 hsa-miR-124 2 47301624 C T Binds one of the sequences with 7 consecutive matches. SNP breaks the match on 2nd position, min. match critera is not satisfied.
rs28381252 hsa-miR-224 19 45976504 C T Binds one of the sequences with 7 consecutive matches. SNP breaks the match on 2nd position, min. match critera is not satisfied.
rs11782817 hsa-miR-144 8 57074233 A C Binds one of the sequences with 10 consecutive matches. SNP breaks the match on 2nd position, min. match critera is not satisfied.
rs11550076 hsa-miR-25 9 110247352 A G Binds one of the sequences with 7 consecutive matches. SNP breaks the match on 2nd position, min. match critera is not satisfied.
rs10196117 hsa-miR-124 2 47301624 C T Binds one of the sequences with 7 consecutive matches. SNP breaks the match on 2nd position, min. match critera is not satisfied.
rs1143552 hsa-miR-181b 22 33256174 A G Binds one of the sequences with 8 consecutive matches. SNP breaks the match on the 3rd position, min. match critera is not satisfied.
rs3733067 hsa-miR-30a 3 52290594 A G Binds one of the sequences with 7 consecutive matches. SNP breaks the match on 4th position, min. match critera is not satisfied.
rs35180728 hsa-miR-1 11 118473587 - T Binds one of the sequences with 7 consecutive matches. SNP breaks (deletes) the match on 4th position, min. match critera is not satisfied.
rs11557771 hsa-miR-218 14 69341243 A C Binds one of the sequences with 8 consecutive matches. SNP breaks the match on 6th position, min. match critera is not satisfied.
rs10055 hsa-miR-30a 16 24835876 T C Binds one of the sequences with 8 consecutive matches. SNP breaks the match on 6th position, min. match critera is not satisfied.
rs12635 hsa-miR-197 19 14072442 C T Binds one of the sequences with 8 consecutive matches. SNP breaks the match on 6th position, min. match critera is not satisfied.
rs3208684 hsa-let-7g 20 30252805 T G Binds one of the sequences with 7 consecutive matches. SNP breaks the match on the 6th position, min. match critera is not satisfied.
rs3208684 hsa-let-7c 20 30252805 T G Binds one of the sequences with 7 consecutive matches. SNP breaks the match on the 6th position, min. match critera is not satisfied.
rs5031032 hsa-miR-1 12 102796132 - T Binds one of the sequences with 7 consecutive matches. SNP breaks (deletes) the match on 6th position, min. match critera is not satisfied.
rs1063320 hsa-miR-148a 6 29798749 C G Binds one of the sequences with 8 consecutive matches. SNP breaks the match on the 7th position, min. match critera is not satisfied.
rs1063320 hsa-miR-148b 6 29798749 C G Binds one of the sequences with 7 consecutive matches. SNP breaks the match on the 7th position, min. match critera is not satisfied.
rs1063320 hsa-miR-152 6 29798749 C G Binds one of the sequences with 7 consecutive matches. SNP breaks the match on the 7th position, min. match critera is not satisfied.
rs12831 hsa-miR-122 16 30081561 A C Binds one of the sequences with 8 consecutive matches. SNP breaks the match on 7th position, min. match critera is not satisfied.
(b)Pairs captured with the minimum energy threshold
SNP miRNA Chr Position Alleles Success Explanation
rs9266 hsa-miR-181c 12 25362217 G A Binds one of the sequences with 7 consecutive matches. SNP breaks the match on the 8th position (7th of seed), the binding energy (of 6mer) is lower than cut off.
1434536 hsa-miR-125b 4 96075965 T C Binds one of the sequences with 8 consecutive matches. SNP breaks the match on the 8th position (7th of seed), the binding energy (of 6mer) is lower than cut off.
rs17026326 hsa-miR-19b 3 30733356 A T Binds one of the sequences with 8 consecutive matches. SNP breaks the match on the 8th position (7th of seed), the binding energy (of 6mer) is lower than cut off.
rs17026326 hsa-miR-19a 3 30733356 A T Binds one of the sequences with 8 consecutive matches. SNP breaks the match on the 8th position (7th of seed), the binding energy (of 6mer) is lower than cut off.
rs3731562 hsa-let-7d 3 48199877 G A Binds one of the sequences with 8 consecutive matches. SNP introduces a GU wobble on 2nd position, the binding energy is lower than cut off.
rs3731562 hsa-let-7g 3 48199877 G A Binds one of the sequences with 8 consecutive matches. SNP introduces a GU wobble on 2nd position, the binding energy is lower than cut off.
rs3731562 hsa-let-7c 3 48199877 G A Binds one of the sequences with 8 consecutive matches. SNP introduces a GU wobble on 2nd position, the binding energy is lower than cut off.
rs3731562 hsa-let-7b 3 48199877 G A Binds one of the sequences with 8 consecutive matches. SNP introduces a GU wobble on 2nd position, the binding energy is lower than cut off.
rs3731562 hsa-let-7a 3 48199877 G A Binds one of the sequences with 8 consecutive matches. SNP introduces a GU wobble on 2nd position, the binding energy is lower than cut off.
rs1051780 hsa-miR-34a 17 8063056 C T Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 2nd position, the binding energy is lower than cut off.
rs59564714 hsa-miR-15a 11 73686038 A G Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 3rd position, the binding energy is lower than cut off.
rs16952445/rs1138624 hsa-miR-122 16 30081565 C T Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 3rd position, the binding energy is lower than cut off.
rs1801938 hsa-miR-1 19 2101071 T G Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 3rd position, the binding energy is lower than cut off.
rs6875894 hsa-miR-135b 5 112179965 C T Binds one of the sequences with 9 consecutive matches. SNP introduces a GU wobble on 4th position, the binding energy is lower than cut off.
rs6875894 hsa-miR-135a 5 112179965 C T Binds one of the sequences with 9 consecutive matches. SNP introduces a GU wobble on 4th position, the binding energy is lower than cut off.
rs73306851 hsa-miR-125b 17 38327577 A G Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 5th position, the binding energy is lower than cut off.
rs11552766 hsa-miR-185 3 49396652 A G Binds one of the sequences with 8 consecutive matches. SNP introduces a GU wobble on 5th position, the binding energy is lower than cut off.
rs2664575 hsa-miR-17 20 47862478 G T Binds one of the sequences with 7 consecutive matches. SNP breaks the match on the 6th position.
rs10187 hsa-miR-210 12 108962804 C T Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 7th position, the binding energy is lower than cut off.
midrule rs70965446 hsa-miR-141 4 56301355 A G Binds one of the sequences with 9 consecutive matches. SNP introduces a GU wobble on 7th position, the binding energy is lower than cut off.
rs8226 hsa-miR-124 22 36677414 G A Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 7th position, the binding energy is lower than cut off.
rs35122558 hsa-miR-155 7 32908099 C T Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 8th position, the binding energy is lower than cut off.
rs55774542 hsa-miR-125b 12 48238167 A G Binds one of the sequences with 7 consecutive matches. SNP introduces a GU wobble on 8th position, the binding energy is lower than cut off.
rs59628511 hsa-miR-124 9 140509654 C G Binds one of the sequences with 8 consecutive matches. SNP introduces a GU wobble on 8th position, the binding energy is lower than cut off.