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Table 1 Frequency of splice site consensus sequences

From: spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

  Usp49 RNA-seq Gencode Refseq
5′ end (GT) 93.23 89.72 92.08
3′ end (AG) 93.70 90.64 92.71
  1. The two first and last nucleotides, corresponding to the splice site consensus sequences, were extracted from all exons originating from the RNA-seq data, Gencode, and RefSeq. The percentage of dinucleotides identical to the canonical motif was calculated.
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BMC Bioinformatics

ISSN: 1471-2105

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