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Table 2 Comparison of the analyzed transcripts to RefSeq

From: spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

  WT GTF Usp49KD GTF
  Sensitivity Specificity Sensitivity Specificity
Exon level 97.90 89.20 98.00 88.70
Intron level 96.40 97.00 96.40 96.90
Intron chain level 91.70 81.90 91.80 81.90
  1. Cufflinks’ cuffcompare tool (v. 2.1.1.) was used to compare RefSeq to the obtained transcripts and the sensitivity and specificity (as defined [20]) for exons, introns, and intron chains are shown.