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Table 5 Comparative data for RAD-T and the servers, Cons-PPISP (Cons-P), PINUP, Promate, PIER, and Meta-PPISP (Meta-P)

From: Transient protein-protein interface prediction: datasets, features, algorithms, and the RAD-T predictor

 

RAD-T

Cons-P

Meta-P

PINUP

Promate

PIER

Average

Median

MCC

0.264

0.147

0.166

0.151

0.136

0.230

0.166

0.151

TPr

0.809

0.322

0.255

0.285

0.939

0.836

0.527

0.322

TNr

0.458

0.810

0.879

0.836

0.152

0.377

0.611

0.810

Prc

0.447

0.493

0.547

0.529

0.400

0.441

0.482

0.493

F1

0.576

0.390

0.348

0.370

0.561

0.577

0.449

0.390

â–³MCC RAD-T

0.000

0.117

0.098

0.113

0.129

0.034

0.098

0.113

% MCC RAD-T

0.00

79.19

58.73

75.26

94.78

14.88

59.11

75.26

â–³ F1 RAD-T

0.000

0.186

0.228

0.205

0.015

-0.002

0.126

0.186

% â–³ F1 RAD-T

0.00

47.73

65.51

55.53

2.66

-0.33

28.16

47.73

  1. These servers were chosen for consistency with literature and because they were the prediction servers that demonstrated reliability or were not altogether offline. Averages and medians indicated do not include RAD-T.