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Table 1 Putative transcriptional regulators controlling circadian-relevant genes

From: Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver

Circadian patterns

Putative transcriptional regulators

1

63 genes / 132 genes*

AP1R, AP4R, CAAT, CLOX, CREB, E2FF, ETSF, EVI1, FKHD, GATA, GREF, HOXF, MYBL, MYT1, NKXH, NR2F, OCT1, PLAG, RUSH, RXRF, SORY, STAT, XBBF

2

15 genes / 42 genes

AHRR, CLOX, CREB, CTCF, E2FF, EREF, ETSF, EVI1, FKHD, GCMF, GLIF, HAND, HEAT, HOMF, HOXF, MYBL, NKXH, NR2F, OCT1, PARF, PAX5, PERO, RXRF, SORY, SP1F, XBBF

3

24 genes / 46 genes

AP1R, CREB, E2FF, EGRF, ETSF, GATA, HEAT, HOXF, IRFF, MYBL, NKXH, NR2F, PERO, RXRF, STAT, TBPF

4

32 genes / 70 genes

CREB, E2FF, ETSF, EVI1, NR2F, RXRF, SORY, SP1F

  1. *:number of genes with orthologous promoter information vs. the total number of genes in the group; TFs shown in bold are those present as regulators in at least three over four groups of genes.