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Table 2 Summary of assignments of reads that were not assigned to the same taxa by phymm and NBC

From: Consistency of metagenomic assignment programs in simulated and real data

 

A sample

 

B sample

 
 

Assigned by Phymm as

   Assigned by NBC as

 %

Assigned by Phymm as

   Assigned by NBC as

 %

Domain

Virus

Bacteria

89.92

Virus

Bacteria

87.5

 

Archaea

Bacteria

3.57

Virus

Archaea

4.6

 

Virus

Archaea

2.69

Bacteria

Virus

3.72

 

Bacteria

Archaea

2.08

Archaea

Bacteria

2.46

 

Bacteria

Virus

1.74

Bacteria

Archaea

1.65

    

Archaea

Virus

0.06

Phylum

Cyanobacteria

Firmicutes

15.36

Proteobacteria

Firmicutes

15.75

 

Firmicutes

Proteobacteria

15.34

Firmicutes

Proteobacteria

14.62

 

Proteobacteria

Firmicutes

13.55

Cyanobacteria

Proteobacteria

9.51

 

Cyanobacteria

Proteobacteria

8.47

Proteobacteria

Bacteroidetes

5.26

 

Firmicutes

Super Bacteroidetes/Chlorobi group

3.91

Proteobacteria

Cyanobacteria

4.85

 

Proteobacteria

Super Bacteroidetes/Chlorobi group

3.56

Firmicutes

Cyanobacteria

4.76

 

Proteobacteria

Cyanobacteria

3.05

Cyanobacteria

Firmicutes

4.26

 

Firmicutes

Cyanobacteria

2.74

Proteobacteria

Super Bacteroidetes/Chlorobi group

3.14

 

Firmicutes

Fusobacteria

2.56

Firmicutes

Super Bacteroidetes/Chlorobi group

2.93

 

Proteobacteria

Bacteroidetes

2.16

Proteobacteria

Actinobacteria

2.27

Class

Bacilli

Gammaproteobacteria

10.75

Alphaproteobacteria

Gammaproteobacteria

6.43

 

Bacilli

Clostridia

6.54

Gammaproteobacteria

Bacilli

5.59

 

Gammaproteobacteria

Bacilli

6.36

Bacilli

Gammaproteobacteria

5.46

 

Bacilli

Eproteobacteria

5.94

Gammaproteobacteria

Betaproteobacteria

4.97

 

Gammaproteobacteria

Betaproteobacteria

4.73

Gammaproteobacteria

Alphaproteobacteria

4.38

 

Gammaproteobacteria

Clostridia

4.33

Gammaproteobacteria

Actinobacteria (class)

4.37

 

Negativicutes

Bacilli

2.73

Alphaproteobacteria

Betaproteobacteria

4.2

 

Bacilli

Flavobacteria

2.65

Bacilli

Eproteobacteria

3.71

 

Alphaproteobacteria

Clostridia

2.5

Gammaproteobacteria

Eproteobacteria

2.56

 

Bacilli

Fusobacteria (class)

2.35

Gammaproteobacteria

Clostridia

2.51

  1. Percent of reads differently assigned at this taxonomic level.