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Table 2 Summary of assignments of reads that were not assigned to the same taxa by phymm and NBC

From: Consistency of metagenomic assignment programs in simulated and real data

  A sample   B sample  
  Assigned by Phymm as    Assigned by NBC as  % Assigned by Phymm as    Assigned by NBC as  %
Domain Virus Bacteria 89.92 Virus Bacteria 87.5
  Archaea Bacteria 3.57 Virus Archaea 4.6
  Virus Archaea 2.69 Bacteria Virus 3.72
  Bacteria Archaea 2.08 Archaea Bacteria 2.46
  Bacteria Virus 1.74 Bacteria Archaea 1.65
     Archaea Virus 0.06
Phylum Cyanobacteria Firmicutes 15.36 Proteobacteria Firmicutes 15.75
  Firmicutes Proteobacteria 15.34 Firmicutes Proteobacteria 14.62
  Proteobacteria Firmicutes 13.55 Cyanobacteria Proteobacteria 9.51
  Cyanobacteria Proteobacteria 8.47 Proteobacteria Bacteroidetes 5.26
  Firmicutes Super Bacteroidetes/Chlorobi group 3.91 Proteobacteria Cyanobacteria 4.85
  Proteobacteria Super Bacteroidetes/Chlorobi group 3.56 Firmicutes Cyanobacteria 4.76
  Proteobacteria Cyanobacteria 3.05 Cyanobacteria Firmicutes 4.26
  Firmicutes Cyanobacteria 2.74 Proteobacteria Super Bacteroidetes/Chlorobi group 3.14
  Firmicutes Fusobacteria 2.56 Firmicutes Super Bacteroidetes/Chlorobi group 2.93
  Proteobacteria Bacteroidetes 2.16 Proteobacteria Actinobacteria 2.27
Class Bacilli Gammaproteobacteria 10.75 Alphaproteobacteria Gammaproteobacteria 6.43
  Bacilli Clostridia 6.54 Gammaproteobacteria Bacilli 5.59
  Gammaproteobacteria Bacilli 6.36 Bacilli Gammaproteobacteria 5.46
  Bacilli Eproteobacteria 5.94 Gammaproteobacteria Betaproteobacteria 4.97
  Gammaproteobacteria Betaproteobacteria 4.73 Gammaproteobacteria Alphaproteobacteria 4.38
  Gammaproteobacteria Clostridia 4.33 Gammaproteobacteria Actinobacteria (class) 4.37
  Negativicutes Bacilli 2.73 Alphaproteobacteria Betaproteobacteria 4.2
  Bacilli Flavobacteria 2.65 Bacilli Eproteobacteria 3.71
  Alphaproteobacteria Clostridia 2.5 Gammaproteobacteria Eproteobacteria 2.56
  Bacilli Fusobacteria (class) 2.35 Gammaproteobacteria Clostridia 2.51
  1. Percent of reads differently assigned at this taxonomic level.