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Table 7 Overall analysis of mapped SNPs and running time

From: A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units

   option D disabled option D enabled
CHIP name reference build mapped SNPs global time mapped SNPs global time
HumanOmni 1S 37.1 1.184.688 20 m 1.185.118 1 h 34 m
HumanOmni 1S 37.3 1.185.031 19 m 1.185.103 1 h 30 m
CNV370 v. 3.0 36.1 373.382 56 m 373.382 2 h 5 m
CNV370 v. 3.0 37.3 373.367 52 m 373.371 2 h 2 m
HH300 v. 2.0 36.1 318.237 29 m 318.237 29 m
HH300 v. 2.0 37.3 318.216 37 m 318.216 37 m
  1. The table is divided in two parts. The first summarizes the performance of G-SNPM when only its first stage has been used to remap against the overall genome sequence those SNPs previously unmapped against the same chromosomal sequence detected by the chip vendor (option "D" disabled). The second part of the table summarizes the performance of G-SNPM when both stages have been used to remap against the overall genome sequence those SNPs previously unmapped against the same chromosomal sequence detected by the chip vendor (option "D" enabled).