From: Guidelines for managing data and processes in bone and cartilage tissue engineering
Name | Acronym | Definition | Ref. |
---|---|---|---|
Brenda Tissue Ontology | BTO | For the source of an enzyme: it comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multi-cellular organisms. | [26] |
Common Anatomy Reference Ontology | CARO | For facilitating the interoperability between existing anatomy ontologies of different species, and providing a template for building new anatomy ontologies. | [27] |
Chemical Entities of Biological Interest | CHEBI | For chemical compounds of biological relevance. | [28] |
Cell Type | CL | For cell types. | [29] |
eagle-i research Resource Ontology | ERO | For instruments, protocols, reagents, animal models and biospecimens. | [30] |
Gene Ontology | GO | For the annotation of gene products with respect to their molecular function, cellular component, and biological role. | [31] |
Protein-protein interaction | MI | For the annotation of experiments concerned with protein-protein interactions. | [32] |
Measurement Method Ontology | MMO | For representing the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms. | [33] |
Microarray and Gene Expression Data Ontology | MO | Concepts, definitions, terms, and resources for standardized description of a microarray experiment | [34] |
Medical Subject Headings (MeSH) | MSH | Terms from National Library of Medicine. | [35] |
NCI Thesaurus | NCI Thesaurus | For clinical care, translational and basic research, and public information and administrative activities. | [36] |
Ontology for Biomedical Investigations | OBI | For investigations: protocols and instrumentation, material, data generated and types of analysis performed on it. | [37] |
Phenotype and Trait Ontology | PATO | For phenotypes. Examples of qualities are red, ectopic, high temperature, fused, small, edematous and arrested. | [38] |
Physician Data Query | PDQ | Wide range of cancer topics, a listing of some 30,000 cancer clinical trials from around the world, a directory of genetics services professionals, the NCI Dictionary of Cancer Terms, and the NCI Drug Dictionary. | [39] |
Systematized Nomenclature Of Medicine Clinical Terms | SNOMEDCT | For medical terms that are used internationally for recording clinical information. They are coded in computer processable mode. | [40] |
NCBI organismal classification | TAXON | Taxonomic classification of living organisms and associated artifacts. | [41] |