From: SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data
Reads collection | Sequencing runs/collection | Library fraction | Raw reads | Cleaned reads | Mapped reads | Mapped/Cleaned reads (%) | Run time (min) | Added run (multiplex, read length) |
---|---|---|---|---|---|---|---|---|
LF1 | LF1 | Large only | 383,575 | 381,612 | 311,919 | 81.74 | 7.1 | LF1 (36 ×, 2 × 151) |
LF1-2 | LF1+LF2 | Large only | 1,083,738 | 1,076,671 | 907,601 | 84.30 | 13.8 | LF2 (36 ×, 2 × 251) |
LF1-3 | LF1+LF2+LF3 | Large only | 1,782,006 | 1,743,523 | 1,478,140 | 84.78 | 21.7 | LF3 (36 ×, 2 × 251) |
LF1-4 | LF1+LF2+LF3+LF4 | Large only | 2,218,000 | 2,177,265 | 1,848,979 | 84.92 | 26.1 | LF4 (36 ×, 2 × 251) |
LF1-5 | LF1+LF2+LF3+LF4+LF5 | Large only | 4,242,048 | 4,178,856 | 3,524,528 | 84.34 | 45.9 | LF5 (6 ×, 2 × 251) |
LF1-5SF1 | LF1+LF2+LF3+LF4+LF5+SF1 | Large + Small | 4,542,917 | 4,478,675 | 3,766,787 | 84.10 | 48.1 | SF1 (36 ×, 2 × 151) |
LF1-5 SF1-2 | LF1+LF2+LF3+LF4+LF5+SF1+SF2 | Large + Small | 5,084,493 | 5,014,933 | 4,204,692 | 83.84 | 50.6 | SF2 (36 ×, 2 × 151) |
LF1-5 SF1-3 | LF1+LF2+LF3+LF4+LF5+SF1+SF2+SF3 | Large + Small | 5,530,560 | 5,457,878 | 4,561,648 | 83.58 | 52.7 | SF3 (36 ×, 2 × 151) |
LF1-5 SF1-4 | LF1+LF2+LF3+LF4+LF5+SF1+SF2+SF3+SF4 | Large + Small | 5,920,185 | 5,845,827 | 4,872,885 | 83.36 | 54.8 | SF4 (36 ×, 2 × 151) |
LF1-5 SF1-5 | LF1+LF2+LF3+LF4+LF5+SF1+SF2+SF3+SF4+SF5 | Large + Small | 6,411,123 | 6,333,054 | 5,270,616 | 83.22 | 56.5 | SF5 (36 ×, 2 × 151) |