Table 4 Runtime of the three SeqAssist workflows recorded when analyzing two paired-end human genome re-sequencing run data files of a CEU HapMap individual NA12878.
From: SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data
Run data file | Bases (Gbp) | SA_RunStats (min) | SA_Run2Ref (min) | SA_Run2Run (min) |
|---|---|---|---|---|
ERR032971_R1 | 3.2 | 194 | NA | 348 |
ERR032972_R1 | 3.3 | 208 | NA | Â |
ERR032971_R2 | 3.2 | 198 | NA | 381 |
ERR032972_R2 | 3.3 | 208 | NA | Â |
ERR032971 | 6.4 | NA | 229 | NA |
ERR032972 | 6.6 | NA | 319 | Â |