Table 1 Cluster analysis of the Salmonella dataset using the method of topic model-derived clustering based on highest probable topic assignment.
From: Topic modeling for cluster analysis of large biological and medical datasets
Most dominant serotype | Number of isolates | Topic ID | % of most dominant serotype |
|---|---|---|---|
Enteritidis | 1046 | T11 | 99.71% |
Saintpaul | 989 | T12 | 99.60% |
Paratyphi B | 850 | T26 | 99.41% |
Enteritidis | 1236 | T2 | 99.35% |
Saintpaul | 709 | T29 | 99.29% |
Hadar | 1837 | T18 | 99.18% |
Poona | 1216 | T22 | 98.68% |
Oranienburg | 1847 | T27 | 98.65% |
Poona | 504 | T16 | 98.41% |
Newport | 1179 | T15 | 98.39% |
Braenderup | 852 | T14 | 98.12% |
Heidelberg | 2125 | T23 | 96.80% |
Typhi | 1845 | T19 | 95.88% |
Braenderup | 1135 | T9 | 95.51% |
Javiana | 2002 | T1 | 94.36% |
Agona | 1846 | T13 | 91.87% |
Infantis | 2130 | T25 | 89.48% |
Thompson | 2195 | T7 | 89.25% |
4, 5, 12:i- | 1024 | T28 | 86.82% |
Paratyphi B | 1041 | T10 | 85.40% |
Typhimurium var. 5- | 288 | T5 | 84.03% |
Montevideo | 2240 | T17 | 80.31% |
4, 5, 12:i- | 854 | T3 | 79.39% |
Mississippi | 1860 | T4 | 78.60% |
Typhimurium var. 5- | 1201 | T20 | 66.36% |
Typhimurium | 1217 | T21 | 54.97% |
Typhimurium | 738 | T0 | 51.63% |
Typhimurium var. 5- | 417 | T6 | 48.68% |
Typhimurium | 815 | T24 | 38.16% |
Muenchen | 3994 | T8 | 36.60% |