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Table 2 The number of correctly predicted template folds by random forest at the family level, superfamily level, and fold level under various ratios of negatives and positive training examples.
From:
Improving protein fold recognition by random forest
Ratio
Family
Superfamily
Fold
Top1
Top5
Top1
Top5
Top1
Top5
128:1 (Original)
469
508
275
344
131
187
100:1
457
505
271
335
119
183
75:1
466
503
273
330
118
181
50:1
459
504
276
329
120
174
25:1
452
504
270
324
114
181
1:1
190
287
81
157
49
107
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