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Table 1 StavroX results for DSS cross-linking of Rim1 tetramer

From: XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry

Score

m/z

Charge

Precursor mass

Calculated mass

PPM

Sequence 1

Sequence 2

Cross-linked residues

233

542.5646

4

2167.237

2167.233

1.48

[DINLLKNGK]

[DIDLLKNGK]

101-101

228

867.1219

3

2599.351

2599.34

4.25

[DGKK]

[KGALVYVEADAANYVFER]

104-64

228

599.3096

3

1795.914

1795.915

-0.16

{mDFSK]

[DINLLKDGK]

1-101

222

620.3467

4

2478.365

2478.36

1.97

[DINLLKNGK]

[YLKYSIASEPR]

101-29

218

542.5644

4

2167.236

2167.233

1.26

[DINLLKNGK]

[DIDLLKNGK]

101-101

190

533.9707

3

1599.898

1599.895

1.47

[NGKK]

[DIDLLKDGK]

104-101

182

971.1868

3

2911.546

2911.541

1.59

[YLKYSIASQPR]

[DDGSKGTTLSLVQK]

29-86

159

759.7696

5

3794.819

3794.812

1.96

[DINLLKNGK]

[KLEDAEGQEDAASSELEHHHHHH}

101-105

149

1012.199

3

3034.581

3034.579

0.62

[DDGSKGTTLSLVQK]

[DDGSKGTTLSLVQK]

86-86

134

1199.317

4

4794.246

4794.257

-2.19

[KGALVYVEADAANYVFER]

[KLEDAEGQENAASSELEHHHHHH}

64-105

132

699.6585

4

2795.612

2795.613

-0.23

[DINLLKNGK]

[GTTLSLVEKDINLLK]

101-95

129

900.9684

4

3600.852

3600.843

2.37

[DDGSKGTTLSLVQK]

[KGALVYVEADAANYVFER]

86-64

125

702.6923

3

2106.062

2106.058

2.2

{mDFSK]

[YLKYSIASQPR]

1 29

119

856.3835

4

3422.512

3422.509

0.96

{mDFSK]

[KLEDAEGQENAASSELEHHHHHH}

1-105

118

636.6761

3

1908.014

1908.015

-0.51

{MDFSK]

[DINLLKDGKK]

1-104

117

818.7658

6

4907.559

4907.547

2.43

[YLKYSIASQPR]

[KGALVYVEADAANYVFERDDGSKGTTLSLVQK]

29-64

115

808.4442

3

2423.318

2423.31

3.26

{mDFSK]

[GTTLSLVQKDINLLK]

1 95

115

792.6701

4

3167.659

3167.662

-1.17

[DIDLLKNGK]

[KGALVYVEADAANYVFER]

101-64

112

646.1035

5

3226.489

3226.49

-0.37

[DGKK]

[KLEDAEGQENAASSELEHHHHHH}

104-105

108

432.7513

4

1727.983

1727.99

-3.91

[DGKK]

[DIDLLKNGKK]

104-104

108

982.3183

5

4907.562

4907.547

3.09

[DIDLLKNGKK]

[MSIVGRIGSEFTEHTSANNNRYLKYSIASQPR]

104-29

  1. The table shows only the highest scoring results for a cross-linked pair