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Table 2 StavroX results for DSS cross-linking of Rim1 dimer

From: XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry

Score

m/z

Charge

Precursor mass

Calculated mass

PPM

Sequence 1

Sequence 2

Cross-linked residues

587

574.8339

4

2296.3136

2296.3122

0.6

[DINLLKDGK]

[DIDLLKNGKK]

101-101

243

533.9705

3

1599.8968

1599.8952

1.01

[NGKK]

[DIDLLKDGK]

104-101

236

866.7906

3

2598.3574

2598.3562

0.45

[NGKK]

[KGALVYVEADAANYVFER]

104-64

224

599.3107

3

1795.9176

1795.9146

1.68

{mDFSK]

[DIDLLKNGK]

1-101

201

633.309

6

3794.8185

3794.8117

1.78

[DINLLKNGK]

[KLEDAEGEENAASSELEHHHHHH}

101-105

187

971.1871

3

2911.5468

2911.5411

1.96

[YLKYSIASQPR]

[DDGSKGTTLSLVQK]

29-86

130

1012.1968

3

3034.576

3034.579

-1.01

[DDGSKGTTLSLVQK]

[DDGSKGTTLSLVQK]

86-86

114

856.3831

4

3422.5106

3422.5091

0.46

{mDFSK]

[KLEDAEGQENAASSELEHHHHHH}

1-105

113

792.6713

4

3167.664

3167.6623

0.52

[DINLLKNGK]

[KGALVYVEADAADYVFER]

101-64

113

636.6771

3

1908.0166

1908.0147

1.03

{MDFSK]

[DINLLKDGKK]

1-104

110

799.8846

6

4794.2715

4794.2567

3.07

[KGALVYVEADAANYVFER]

[KLEDAEGQENAASSELEHHHHHH}

64-105

108

650.5901

4

2599.3385

2599.3402

-0.66

[DGKK]

[KGALVYVEADAANYVFER]

105-64

102

821.4157

5

4103.0494

4103.0455

0.96

[DDGSKGTTLSLVQK]

[KGALVYVEADAANYVFERDDGSK]

86-64

  1. The table shows only the highest scoring results for a cross-linked pair