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Table 3 XLPM results for DSS cross-linking of Rim1 tetramer

From: XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry

m/z Sequence 1 Sequence 2 Calculated mass Precursor mass Charge XLPM score Cross-linked residue
799.8825073 kLEDAEGQENAASSELEHHHHHH kGALVYVEADAANYVFER 4793.26531 4793.248047 6 1.355730948 105-64
1013.544006 kGALVYVEADAANYVFERDDGSkGTTLSLVQk YLkYSIASQPRR 5062.65627 5062.680664 5 1.341551127 29-86
568.5924683 kLEDAEGQENAASSELEHHHHHH mDFSk 3405.52264 3405.507813 6 1.340157423 105-1
720.9754028 kGALVYVEADAANYVFER DDGSkGTTLSLVQk 3599.85173 3599.837891 5 1.25584922 64-86
870.2092896 kGALVYVEADAANYVFER YLkYSIASQPR 3476.81381 3476.805908 4 1.200043431 64-29
  1. The table shows only the highest scoring results for a cross-linked pair
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BMC Bioinformatics

ISSN: 1471-2105

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