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Table 3 XLPM results for DSS cross-linking of Rim1 tetramer

From: XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry

m/z

Sequence 1

Sequence 2

Calculated mass

Precursor mass

Charge

XLPM score

Cross-linked residue

799.8825073

kLEDAEGQENAASSELEHHHHHH

kGALVYVEADAANYVFER

4793.26531

4793.248047

6

1.355730948

105-64

1013.544006

kGALVYVEADAANYVFERDDGSkGTTLSLVQk

YLkYSIASQPRR

5062.65627

5062.680664

5

1.341551127

29-86

568.5924683

kLEDAEGQENAASSELEHHHHHH

mDFSk

3405.52264

3405.507813

6

1.340157423

105-1

720.9754028

kGALVYVEADAANYVFER

DDGSkGTTLSLVQk

3599.85173

3599.837891

5

1.25584922

64-86

870.2092896

kGALVYVEADAANYVFER

YLkYSIASQPR

3476.81381

3476.805908

4

1.200043431

64-29

  1. The table shows only the highest scoring results for a cross-linked pair