Figure 4

Triple Integration (WES, Cuffdiff Gene, Microarray). A triple integration was performed by combining Cuffdiff gene data with WES and a gene expression microarray experiment. The integrated WES data (green columns) includes: Effect, Codon Change, AA Change, Tumor DP (Depth), Tumor AF (Allelic Frequency). The corresponding RNA-seq data (light red columns), show the Sample 1 FPKM (pooled normal), Sample 2 FPKM (tumor), and p-value from Cufflinks. The microarray data (blue columns) display the corresponding Affy Probes, and Avg Probe Values. The grey columns are common across all modalities and show, Entrez ID, Gene Symbol, Gene Name, and Member List (gene list).