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Table 4 Key residues covered by APCs and their roles in co-occurrence cluster 2 of cytochrome c

From: Discovering co-occurring patterns and their biological significance in protein families

APC

Residue(s)

Role(s)

Literature

4

Cys(C)14

Cys(C) 14 enhances axial ligand strength between His18 and the heme.

[32, 33]

 

Cys(C)17

Cys(C) 17 enhances axial ligand strength between His18 and the heme.

[32, 33]

 

His(H)18

His(H)18 forms an axial ligand with the heme from the proximal front.

[34, 35]

5

Tyr(Y)67

Tyr(Y)67, its hydroxyl group, forms a H-bond with side chains of Met80 for structural stabilization.

[36, 28]

 

Pro(P)71

Pro(P)71 helps coordinate the axial ligand between Met80 and the heme.

[37]

 

Pro(P)76

Pro(P)76 helps coordinate the axial ligand between Met80 and the heme.

[38]

 

Met(M)80

Met(M)80 forms an axial ligand with the heme from the distal side.

[34, 35]

 

Phe(F)82

Phe(F)82 helps stabilize the native heme environment.

[39]

6

Gly(G)41

Gly(G)41 helps stabilize the axial ligand between Met80 and the heme.

[40]

7

Asn(N)52

Asn(N)52 maintains a hydrogen bond with the heme to stabilize the environment.

[41, 42]

8

Leu(L)94

One of Leu(L)94 or Tyr(Y)97 is required to provide a hydrophobic environment for the function of cyt-c.

[43]

 

Tyr(Y)97

One of Leu(L)94 or Tyr(Y)97 is required to provide a hydrophobic environment for the function of cyt-c.

[43]