Skip to main content

Table 5 The proportion of proteins repacked by pacoPacker with lower RMSD compared with other predictors.

From: Improved packing of protein side chains with parallel ant colonies

Sequence Length Number CW CIS-RR CW SCWRL4 CW both
> 500 53 28.3% 30.2% 13.2%
500~ 400 34 41.2% 38.2% 20.6%
400~ 300 62 56.5% 62.9% 41.9%
300~ 200 108 59.3% 66.7% 51.9%
200~ 100 139 63.3% 67.6% 51.1%
< 100 46 76.1% 76.1% 63.0%
  1. The first column denotes the range of sequence length; the second column records the number of proteins; the remaining columns show the proportion of proteins packed side chains by pacoPacker with smaller RMSD than CIS-RR or SCWRL4 alone, or combined.