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Table 3 Compression performance on experimental NGS data sets.

From: Compression of next-generation sequencing quality scores using memetic algorithm

  SRR027474 SRR396942 SRR824063 SRR824065 SRR932018
RLE CR (%) 38.95 60.52 54.97 47.27 64.29
  BPQ 3.11 4.84 4.40 3.78 5.14
Huffman CR (%) 53.22 60.83 42.35 58.12 49.30
  BPQ 4.26 4.87 3.39 4.65 3.94
gzip CR (%) 22.70 35.94 30.33 26.79 30.25
  BPQ 1.82 2.88 2.43 2.14 2.42
bzip2 CR (%) 16.23 31.12 25.84 21.14 25.07
  BPQ 1.30 2.49 2.07 1.69 2.01
LZMA CR (%) 17.63 31.32 25.63 23.08 25.00
  BPQ 1.41 2.51 2.05 1.85 2.00
MMQSC CR (%) 14.38 30.96 18.63 27.38 22.75
  BPQ 1.15 2.40 1.49 2.19 1.82