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Table 3 Performance and information on each of the CASP9 targets.

From: LigandRFs: random forest ensemble to identify ligand-binding residues from sequence information alone

Target Target PDB id Number of residues Chemical Class Sen (%) Prec (%) MCC Ratio (%)§
T0518 3NMB 288 Metal 57.14 57.14 0.56 2.43
T0521 3MSE 179   33.33 33.33 0.30 5.03
T0529 3MWT 569   50.00 9.09 0.20 0.70
T0539 2L0B 81   37.50 50.00 0.38 9.88
T0548 3NNQ 106   100.00 66.67 0.81 3.77
T0582 3O14 222   100.00 66.67 0.81 1.80
T0585 3NE8 234   60.00 75.00 0.66 2.14
T0625 3ORU 233   66.67 22.22 0.37 1.29
T0629 2XGF 216   100.00 73.68 0.85 6.48
T0635 3N1U 191   100.00 33.33 0.57 1.57
Average     74.46 48.71 0.55 3.51
T0570 3NO3 258 Metal, Non-metal 50.00 44.44 0.45 3.10
T0607 3PFE 471   57.14 32.00 0.41 2.97
T0615 3NQW 179   26.67 44.44 0.30 8.38
Average     44.60 40.29 0.39 4.82
T0515 3MT1 365 Non-metal 50.00 20.69 0.29 3.29
T0516 3NO6 229   30.77 50.00 0.36 5.68
T0524 3MWX 325   53.85 77.78 0.64 4.00
T0526 3NRE 290   11.11 5.56 0.04 3.10
T0547 3NZP 611   58.82 26.32 0.37 2.78
T0565 3NPF 326   41.67 62.50 0.50 3.68
T0584 3NF2 352   23.08 25.00 0.21 3.69
T0591 3NRA 406   41.67 83.33 0.58 2.96
T0597 3NIE 429   31.58 37.50 0.32 4.43
T0599 3OS6 399   7.69 11.11 0.07 3.26
T0604 3NLC 549   9.09 16.67 0.08 6.01
T0609 3OS7 340   70.00 70.00 0.69 2.94
T0613 3OBI 287   26.67 44.44 0.32 5.23
T0622 3NKL 138   20.00 37.50 0.21 10.87
T0632 3NWZ 168   18.75 37.50 0.21 9.52
T0636 3P1T 336   23.53 66.67 0.38 5.06
T0641 3NYI 296   11.11 66.67 0.26 6.08
Average     31.14 43.48 0.32 4.86