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Table 1 Recent studies for constructing protein graphs.
From:
Adjusting protein graphs based on graph entropy
Ref.
Vertex Set
Edge Set
[
20
]
C
α
atoms
labeled edges
[
21
]
DSSP
attributed edges
[
22
]
side chains
defined by interacted energy
[
23
]
residues
defined by geometrical constraints
[
24
]
SSE
labeled edges
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