Table 1 Software assessment. For each program we report the sensitivity (Sn), the specificity (Sp), the Jaccard Index [22], the type I error (EI) and the type II (EII) error. EasyCluster1 refers to the oldest EasyCluster version, whereas EasyCluster2+Ann is the new implementation in which final clusters are refined by known annotations.
From: EasyCluster2: an improved tool for clustering and assembling long transcriptome reads
Dataset including only spliced reads | |||||
|---|---|---|---|---|---|
Program | Sn | Sp | JI | EI | EII |
EasyCluster1 | 0,732 | 0,975 | 0,732 | 0,214 | 0 |
RCDA | 0,783 | 0,969 | 0,770 | 0,147 | 0,006 |
wcd | 0,754 | 0,913 | 0,708 | 0,178 | 0,030 |
EasyCluster2 | 0,825 | 0,950 | 0,805 | 0,122 | 0,024 |
Full Dataset (spliced + unspliced reads) | |||||
Program | Sn | Sp | JI | EI | EII |
wcd | 0,520 | 0,850 | 0,377 | 0,335 | 0,037 |
EasyCluster2 | 0,675 | 0,930 | 0,637 | 0,490 | 0,047 |
EasyCluster2+Ann | 0,828 | 0,905 | 0,807 | 0,019 | 0,037 |