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Table 1 Software assessment. For each program we report the sensitivity (Sn), the specificity (Sp), the Jaccard Index [22], the type I error (EI) and the type II (EII) error. EasyCluster1 refers to the oldest EasyCluster version, whereas EasyCluster2+Ann is the new implementation in which final clusters are refined by known annotations.

From: EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

Dataset including only spliced reads
Program Sn Sp JI EI EII
EasyCluster1 0,732 0,975 0,732 0,214 0
RCDA 0,783 0,969 0,770 0,147 0,006
wcd 0,754 0,913 0,708 0,178 0,030
EasyCluster2 0,825 0,950 0,805 0,122 0,024
Full Dataset (spliced + unspliced reads)
Program Sn Sp JI EI EII
wcd 0,520 0,850 0,377 0,335 0,037
EasyCluster2 0,675 0,930 0,637 0,490 0,047
EasyCluster2+Ann 0,828 0,905 0,807 0,019 0,037