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Table 2 Five-fold cross validation results on single SVM model trained with various features.

From: Characterization and identification of protein O-GlcNAcylation sites with substrate specificity

Training features Number of positive data Number of negative data Sn Sp Acc MCC
20D Binary code 375 375 0.66 0.69 0.69 0.21
Amino Acid Composition (AAC) 375 375 0.64 0.65 0.65 0.17
Amino Acid Pair Composition (AAPC) 375 375 0.66 0.67 0.67 0.20
Accessible Surface Area (ASA) 375 375 0.57 0.59 0.59 0.10
Position Weight Matrix (PWM) 375 375 0.62 0.63 0.63 0.14
Position-specific scoring matrix (PSSM) 375 375 0.68 0.69 0.69 0.22
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