Skip to main content

Table 3 Recognition accuracy by n-fold cross validation procedure for different feature extraction techniques for SVM classification for the EDD dataset.

From: Improving protein fold recognition using the amalgamation of evolutionary-based and structural based information

Feature sets

n= 5

n= 6

n= 7

n= 8

n= 9

n= 10

PF1 [23]

50.2

50.5

50.5

50.7

50.8

50.8

PF2 [23]

49.3

49.5

49.7

49.8

49.8

49.9

PF [24]

54.7

55.0

55.2

55.4

55.5

55.6

O [21]

46.4

46.6

46.6

46.7

46.7

46.9

AAC [5]

40.3

40.6

40.7

40.7

40.9

40.9

AAC+HXPZV [5]

40.2

40.4

40.6

40.7

40.9

40.9

ACC [29]

84.9

85.2

85.4

85.6

85.8

85.9

PSSM+PF1 [55]

74.1

74.5

74.7

75.0

75.1

75.2

PSSM+PF2 [55]

73.7

74.1

74.5

74.6

74.7

74.9

PSSM+PF [55]

78.2

78.6

78.8

79.0

79.1

79.3

PSSM+O [55]

67.6

68.0

68.1

68.3

68.3

68.5

PSSM+AAC [55]

60.9

61.3

61.5

61.6

61.7

61.9

PSSM+AAC+HXPZV [55]

66.7

67.2

67.4

67.7

67.8

67.9

Mono-gram [19]

76.2

76.3

76.6

76.8

77.0

76.9

Bi-gram [19]

83.6

84.0

84.1

84.3

84.3

84.5

k -AAP (this paper)

90.1

90.2

90.4

90.5

90.6

90.6