Table 1 Results of MT applied to three short-read alignment programs (BWA, Bowtie and Bowtie2) ran on the paired-end sequencing simulated reads of varying number.
MRs | 103 | 104 | 105 | 106 | 107 |
|---|---|---|---|---|---|
BWA | |||||
MR1 | F | F | F | F | F |
MR2 | F | F | F | F | F |
MR3 | F | F | F | F | F |
MR4 | Â | F | F | F | F |
MR5 | F | F | F | F | F |
MR6 | Â | Â | Â | Â | Â |
MR7 | Â | Â | Â | F | F |
MR8 | Â | Â | Â | Â | Â |
MR9 | Â | Â | Â | Â | Â |
Bowtie | |||||
MR1 | Â | ||||
MR2 | F | F | F | F | F |
MR3 | Â | Â | Â | Â | Â |
MR4 | Â | Â | Â | Â | Â |
MR5 | F | F | F | F | F |
MR6 | Â | Â | Â | Â | Â |
MR7 | Â | Â | Â | Â | Â |
MR8 | F | F | F | F | F |
MR9 | Â | Â | Â | Â | Â |
Bowtie2 | |||||
MR1 | Â | ||||
MR2 | F | F | F | F | F |
MR3 | Â | Â | Â | Â | Â |
MR4 | Â | Â | Â | Â | Â |
MR5 | F | F | F | F | F |
MR6 | Â | Â | Â | Â | Â |
MR7 | Â | Â | Â | Â | Â |
MR8 | F | F | F | F | F |
MR9 | Â | Â | Â | Â | Â |