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Table 2 Results of MT applied to 3 NGS short-read alignment programs ran on the paired-end and single end sequencing reads of HapMap sample NA12872.

From: Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie

MRs BWA BOWTIE BOWTIE2
Paired-end sequencing reads
MR1 F   
MR2 F F F
MR3 F   
MR4 F   
MR5 F F F
MR6    
MR7 F   
MR8   F F
MR9 F   F
Single-end sequencing reads
MR1 F   
MR2 F F F
MR3 F   
MR4    
MR5 F F F
MR6    
MR7    
MR8   F F
MR9 F   F
  1. F (Failure).