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Table 6 The three physicochemical properties selected by SCM-PCPs.

From: SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides

Amino acid

Heme protein Score (Rank)

1SNEP660103 Score (Rank)

2TAKK010101 Score (Rank)

3KARP850101 Score (Rank)

F-Phe

705.3(1)

0.438(2)

23.0(2)

0.93(19)

H-His

615.6(2)

0.320(4)

11.9(9)

0.982(14)

G-Gly

604.3(3)

-0.073(12)

0.0(20)

1.142(3)

W-Trp

603.1(4)

0.493(1)

24.2(1)

0.925(20)

P-Pro

601.3(5)

-0.016(9)

15.0(7)

1.055(8)

M-Met

599.6(6)

-0.041(10)

11.9(8)

0.947(18)

D-Asp

574.3(7)

-0.285(20)

4.9(14)

1.033(11)

L-Leu

570.1(8)

-0.008(8)

17.0(5)

0.967(15)

K-Lys

568.3(9)

0.049(6)

10.5(10)

1.093(6)

R-Arg

566.1(10)

0.079(5)

7.3(12)

1.038(10)

A-Ala

558.8(11)

-0.110(13)

9.8(11)

1.041(9)

Y-Tyr

541.0(12)

0.381(3)

17.2(4)

0.961(16)

V-Val

535.5(13)

-0.155(16)

15.3(6)

0.982(13)

I-Ile

518.3(14)

0.001(7)

17.2(3)

1.002(12)

Q-Gln

511.2(15)

-0.067(11)

2.4(19)

1.165(2)

T-Thr

498.6(16)

-0.208(18)

6.9(13)

1.073(7)

C-Cys

494.9(17)

-0.184(17)

3.0(17)

0.96(17)

E-Glu

494.6(18)

-0.246(19)

4.4(15)

1.094(5)

N-Asn

468.7(19)

-0.136(14)

3.6(16)

1.117(4)

S-Ser

401.4(20)

-0.153(15)

2.6(18)

1.169(1)

R

1.00

0.60

0.58

-0.56

  1. 1SNEP660103 = Principal component III.
  2. 2TAKK010101 = Side-chain contribution to protein stability (kJ/mol).
  3. 3KARP850101 = Flexibility parameter for no rigid neighbors.