Skip to main content

Table 4 SARAH1 hydrophobicity scale.

From: Protein inter-domain linker prediction using Random Forest and amino acid physiochemical properties

Amino acid

Hydrophobicity index

Amino acid

Hydrophobicity index

C

1,1,0,0,0

G

0,0,0,-1,-1

F

1,0,1,0,0

T

0,0,-1,0,-1

I

1,0,0,1,0

S

0,0,-1,-1,0

V

1,0,0,0,1

R

0,-1,0,0,-1

L

0,1,1,0,0

P

0,-1,0,-1,0

W

0,1,0,1,0

N

0,-1,-1,0,0

M

0,1,0,0,1

D

-1,0,0,0,-1

H

0,0,1,1,0

Q

-1,0,0,-1,0

Y

0,0,1,0,1

E

-1,0,-1,0,0

A

0,0,0,1,1

K

-1,-1,0,0,0

  1. Each AA is assigned a five-bit code in descending order of the binary value of the corresponding code where the right-half is the negative mirror image of the left-half. The 10 most hydrophobic residues are positive, and the 10 least hydrophobic residues are negative.