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Table 1 The IFACEwat improves both the number of hits and the rank of the first hit for either protein complex cases of with- or without interfacial water.

From: IFACEwat: the interfacial water-implemented re-ranking algorithm to improve the discrimination of near native structures for protein rigid docking

Crystal structure contains WAT Complex Type ↑ number of hits ↑ rank of the first hit
    ZDOCK IFACEwat ZDOCK IFACEwat ΔGinterface(1sthit)
No 1FC2 O 16 20 - - -
  4CPA E - - 51 4 -26.14
  1QA9 O - - 2 1 -76.04
  2AYO O - - 32 10 -47.54
  2HLE O - - 2 1 -178.17
  2VDB O - - 57 18 -58.42
  3BP8 O - - 11 3 -32.08
Yes 1DQJ A 6 7 - - -
  1BGX A 0 1 - 1 -348.73
  1K4C AB 1 3 - - -
  1KXQ AB 0 1 - 1 -191.97
  1CLV E 140 141 - - -
  2O3B E - - 7 5 -47.95
  1YVB E 0 1 - 2 -55.84
  1FLE E - - 6 4 -47.85
  1AK4 O 0 1 - 3 -44.51
  1FQJ O 2 4 - - -
  1H9D O 0 1 - 1 -131.85
  1HCF O 0 1 - 1 -175.53
  1RV6 O 0 1 - 3 -110.72
  1T6B O 3 5 - - -
  1Z0K O 0 1 - 1 -133.32
  1Z5Y O 2 3 - - -
  2A9K O 0 1 - 2 -161.63
  2B4J O 6 8 - - -
  1MQ8 O 4 5 - - -
  1R6Q O 3 4 - - -
  2CFH O 9 10 - - -
  2OZA O 1 2 - - -
  2ZOE O 6 8 - - -
  2BTF O - - 6 1 -142.31
  2OOR O 0 3 - 1 -141.03
  1. "-" represents "not applicable" for the corresponding cases. For examples, in the first case [PDB:1FC2], it is found that IFACEwat improves the number of hits (i.e. 4 hits more than ZDOCK), but does not improve the rank of the first hit (e.g. the first hit found by both IFACEwat and ZDOCK is ranked at top-1). Also noted in this table that ∆Ginterface value is only shown for the first hit of the case, in which the rank of the first hit is improved by the IFACEwat.
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