From: Using distances between Top-n-gram and residue pairs for protein remote homology detection
Methods | ROC | ROC50 | Profile | Sequence | Source |
---|---|---|---|---|---|
SVM-DR | 0.919 | 0.715 | No | Yes | This study |
Monomer-dist | 0.919 | 0.508 | No | Yes | [30] |
SVM-LA (ß = 0.5) | 0.925 | 0.649 | No | Yes | [18] |
SVM-Pairwise | 0.901 | 0.399 | No | Yes | [16] |
SVM-DT | 0.948 | 0.800 | Yes | No | This study |
SVM-Top-n-gram | 0.907 | 0.696 | Yes | No | [28] |
SVM-Top-n-gram-LSA | 0.939 | 0.767 | Yes | No | [28] |
SVM-PDT-Profile (ß = 8, n = 2) | 0.950 | 0.740 | Yes | No | [29] |
PseAACIndex-Porfile (λ = 5) | 0.922 | 0.712 | Yes | No | [41] |
BioSVM-2L (1st+2nd layers) | 0.927 | 0.888 | Yes | No | [42] |
HHSearch | 0.915 | 0.990 | Yes | No | [4] |