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Table 9 Distribution of structure superposition parameters between predicted models and PDB structures

From: Structure prediction of polyglutamine disease proteins: comparison of methods

 

I-TASSER

Rosetta

p-value

TM-score

0.50 ± 0.06

0.45 ± 0.06

<0.0001

RMSD (Ã…)

1.53 ± 0.34

1.74 ± 0.34

<0.0001

Aligned number

24.05 ± 2.14

25.56 ± 2.41

<0.0001

Sequence Identity a

(0.30,0.71)

(0.38,0.52)

<0.0001

Exact Match (<5.0 Ã…) a

(0,16)

(0,0)

<0.0001

Exact Qs Match(<5.0 Ã…) a

(0,1)

(0,0)

<0.0001

Total Qs Match(<5.0 Ã…) a

(5,8)

(8,11)

<0.0001

Exact Match (other) a

(0,0)

(0,0)

<0.0001

Exact Qs Match(other) a

(0,0)

(0,0)

<0.0001

Total Qs Match(other) a

(0,1)

(0,1)

<0.0001

Exact Match (all) a

(6,25)

(0,0)

<0.0001

Exact Qs Match (all) a

(0,1)

(0,0)

<0.0001

Total Qs Match (all) a

(6,8)

(9,12)

<0.0001

ESOP a

(0,9.09)

(0,0)

<0.0001

ESO a

(0, 53.13)

(0,0)

<0.0001

  1. a The values between brackets represent the value of the property for the best structure superposition at the first and third quartile, respectively, of their distributions.