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Table 1 Overlap with previously published and validated set of 244 somatic variants in HCC1954.

From: Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools

Experiment

Events

Somatic

Intra- chromosomal breakpoints

1 read pair

395,290

124

 

VariationHunter, 3 read pairs

508

11 (9%)

 

Breakout, 3 read pairs

1,184

93 (75%)

 

GASV, 3 read pairs

1,714

82 (66%)

All breakpoints

1 read pair

5,773,399

179

 

Breakout, 3 read pairs

1,377

135 (75%)

 

GASV, 3 read pairs

5,565

90 (50%)

  1. The numbers in the parentheses indicate percentage of detected breakpoints relative to the maximum number of detectable breakpoints (overlapping with at least one read pair).