Table 2 A list of 21 genes commonly identified in both microarray datasets using Significant Analysis of Microarrays.
From: Inference of radio-responsive gene regulatory networks using the graphical lasso algorithm
| Â | Gene Symbol | Entrez Gene ID | GSE1977 | GSE23393 | ||
|---|---|---|---|---|---|---|
| Â | Â | Â | Fold-change | FDR (%) | Fold-change | FDR (%) |
Induced Genes | ACTA2 | 59 | 2.02 | 0.00 | 1.85 | 0.00 |
| Â | ATF3 | 467 | 3.05 | 0.00 | 1.40 | 9.79 |
| Â | BAX | 581 | 1.53 | 0.00 | 1.80 | 0.00 |
| Â | BBC3 | 27113 | 4.00 | 0.00 | 1.48 | 9.79 |
| Â | CCNG1 | 900 | 1.72 | 0.00 | 1.51 | 0.00 |
| Â | CD70 | 970 | 2.07 | 0.00 | 4.85 | 0.00 |
| Â | DDB2 | 1643 | 2.38 | 0.00 | 5.33 | 0.00 |
| Â | EI24 | 9538 | 1.92 | 0.00 | 1.59 | 3.20 |
| Â | FDXR | 2232 | 2.34 | 0.00 | 13.12 | 0.00 |
| Â | GADD45A | 1647 | 4.50 | 0.00 | 2.34 | 0.00 |
| Â | MMP9 | 4318 | 2.94 | 2.06 | 1.85 | 9.79 |
| Â | PCNA | 5111 | 2.04 | 0.00 | 3.54 | 0.00 |
| Â | PLK2 | 10769 | 11.54 | 0.00 | 3.63 | 0.00 |
| Â | PLK3 | 1263 | 1.47 | 0.00 | 1.54 | 3.20 |
| Â | PPM1D | 8493 | 2.46 | 0.00 | 1.64 | 0.00 |
| Â | TNFRSF10B | 8795 | 2.33 | 0.00 | 2.46 | 0.00 |
Repressed Genes | BIRC5 | 332 | 0.63 | 16.09 | 0.43 | 3.52 |
| Â | CCNB1 | 891 | 0.36 | 0.00 | 0.50 | 0.00 |
| Â | HUS1 | 3364 | 0.30 | 16.09 | 0.81 | 16.52 |
| Â | MDC1 | 9656 | 0.88 | 16.68 | 0.64 | 3.52 |
| Â | MYC | 4609 | 0.50 | 0.00 | 0.65 | 16.52 |