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Table 1 Running time (seconds) of different CPU algorithms

From: Multicore and GPU algorithms for Nussinov RNA folding

n

CPU 1

OMP 1

Ratio

CPU 2

OMP 2

Ratio

3000

35.9

7.1

5.1

22.3

4.8

4.6

4000

98.1

18.6

5.3

52.8

11.3

4.7

5000

208.1

41.6

5.0

102.9

22.2

4.6

6000

363.7

72.2

5.0

177.5

45.3

3.9

7000

646.1

125.2

5.2

281.3

61.0

4.6

8000

924.4

197.8

4.7

419.6

92.5

4.5

9000

1461.5

291.0

5.0

596.6

129.9

4.6

10000

1927.7

395.0

4.9

819.1

176.9

4.6

11000

2800.8

559.2

5.0

1088.4

234.5

4.6

12000

3525.2

741.4

4.8

1413.6

303.3

4.7

13000

4852.3

978.8

5.0

1795.4

388.4

4.6

14000

6008.9

1250.2

4.8

2243.5

485.2

4.6

15000

7930.0

1641.4

4.8

2757.3

594.0

4.6

16000

10120.0

2380.8

4.3

3343.5

725.4

4.6