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Table 3 Performance statistics (A4, A5, S4, S5: simulated; C1, C2, PA: real)

From: CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing

Tool dataset (# reads) # merges # correct merges time (sec) accuracy F 1 dataset (# reads) # merges # correct merges time (sec) accuracy F 1
CASPER   999,936 967,842 30 0.968 0.984   713,782 667,421 23 0.932 0.965
COPE A4 262,661 241,630 183 0.242 0.389 C1 603,357 572,885 205 0.800 0.889
FLASH (1,000,000) 989,960 732,040 20 0.732 0.845 (716,366) 688,730 601,561 22 0.840 0.913
PANDAseq   991,698 807,691 6 0.808 0.894   693,518 590,898 5 0.825 0.904
CASPER   999,973 997,201 30 0.997 0.999   1,345,759 1,233,831 40 0.914 0.955
COPE A5 924,634 915,981 205 0.916 0.956 C2 1,105,743 1,046,420 319 0.775 0.873
FLASH (1,000,000) 999,578 977,355 19 0.977 0.989 (1,350,602) 1,282,916 1,101,436 35 0.816 0.898
PANDAseq   999,101 978,527 6 0.979 0.989   1,298,903 1,080,593 9 0.800 0.889
CASPER   1,000,000 960,986 29 0.961 0.980   671,877 658,631 19 0.977 0.989
COPE S4 262,107 230,595 181 0.231 0.375 PA [COPE does not run on PA]
FLASH (1,000,000) 999,964 697,867 18 0.698 0.822 (673,845) 660,984 634,261 16 0.941 0.970
PANDAseq   999,976 785,919 5 0.786 0.880   660,593 635,663 4 0.943 0.971
CASPER   1,000,000 997,303 28 0.997 0.999       
COPE S5 974,219 961,366 162 0.961 0.980       
FLASH (1,000,000) 999,921 977,431 19 0.977 0.989       
PANDAseq   999,947 976,701 6 0.977 0.988